fix: copying cypher scripts in the scripts/ directory and adding the command line to run the script in the README

docs: updating the README.md regarding the creation of a Neo4j database from the results of Ortho_KB

feat: completing the create_and_populate bash script to create a functional Neo4j database using the example_data/results/

fix: the file name for new ontology terms was changed in the module but not in the import script. Corrected

feat: adding the support for apptainer and wave containers. Using waive containers for python scripts. Also bumping some package versions.

Resolve "create transcriptomic subworkflow"

Closes #106 ; rearranges input file processing making RNA-seq and QTL input optional.

See merge request !2

fix: issue with conda conflict for this env on our server. Switching to an olfer rdflib version works

refactor: moving publishdirs to a module.config. Also moved all gunzip to proper subworkflows for the genome files and functional annotation files. Adding a missing parameter in the config for GO terms and for paralogs.